Transcript: lnc-SLC2A13-2:1

Basic information

LNCipedia transcript ID: lnc-SLC2A13-2:1 
LNCipedia gene ID: lnc-SLC2A13-2
Ensembl Gene ID: ENSG00000225342
Ensembl Transcript ID: ENST00000412812
Location (hg38): chr12:40186009-40223803
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 585 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00020243; ENST00000412812.1; AC079630.4-001; OTTHUMT00000257956.1; NONHSAT027723
Alternative gene names: XLOC_010053; linc-SLC2A13-5; ENSG00000225342.1; AC079630.4; OTTHUMG00000133699.1; ENSG00000225342.2; AC079630.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.4399 non-coding 
CPAT coding probability 6.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC2A13-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC2A13-2:1
3.1 lnc-SLC2A13-2:1
4.0 lnc-SLC2A13-2:1
4.1 lnc-SLC2A13-2:1
5.0 lnc-SLC2A13-2:1
5.1 lnc-RPAP3-61:4
5.2 lnc-SLC2A13-2:1