Transcript: lnc-SLC2A4RG-2:4

Basic information

LNCipedia transcript ID: lnc-SLC2A4RG-2:4 
LNCipedia gene ID: lnc-SLC2A4RG-2
Ensembl Gene ID: ENSG00000229299
Ensembl Transcript ID: ENST00000447343
Location (hg38): chr20:63744689-63745951
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 464 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447343.2
Alternative gene names: ENSG00000229299.2; RP4-583P15.10; AL121845.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.2888 non-coding 
CPAT coding probability 9.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC2A4RG-2:4 no no no no

Available literature

  1. Xu (2015), Microarray expression profile analysis of long non-coding RNAs in human breast cancer: a study of Chinese women., Biomed. Pharmacother.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC2A4RG-1:5
4.0 lnc-SLC2A4RG-2:4
4.1 lnc-SLC2A4RG-2:4
5.0 lnc-SLC2A4RG-2:4
5.1 lnc-GNAS-81:4
5.2 lnc-SLC2A4RG-2:4