Transcript: lnc-SLC2A8-2:1

Basic information

LNCipedia transcript ID: lnc-SLC2A8-2:1 
LNCipedia gene ID: lnc-SLC2A8-2
Ensembl Gene ID: ENSG00000271833
Ensembl Transcript ID: ENST00000607259
Location (hg38): chr9:127366770-127367397
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 628 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607259.1
Alternative gene names: ENSG00000271833.1; RP11-356B19.11; AL445222.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.0821 non-coding 
CPAT coding probability 1.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC2A8-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC2A8-2:1
4.0 lnc-SLC2A8-2:1
4.1 lnc-SLC2A8-2:1
5.0 lnc-SLC2A8-2:1
5.1 lnc-PTPA-110:1
5.2 lnc-SLC2A8-2:1