Transcript: lnc-SLC30A4-8:1

Basic information

LNCipedia transcript ID: lnc-SLC30A4-8:1 
LNCipedia gene ID: lnc-SLC30A4-8
Location (hg38): chr15:46812164-46813972
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 391 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023667; NONHSAT042292
Alternative gene names: XLOC_011468; linc-SLC30A4-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.0484 non-coding 
CPAT coding probability 2.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC30A4-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-90J19.1.1-1:1
3.1 lnc-RP11-90J19.1.1-3:1
4.0 lnc-RP11-90J19.1.1-3:1
4.1 lnc-RP11-90J19.1.1-3:1
5.0 lnc-RP11-90J19.1.1-3:1
5.1 lnc-SERINC4-46:1
5.2 lnc-SLC30A4-8:1