Transcript: lnc-SLC35B4-1:1

Basic information

LNCipedia transcript ID: lnc-SLC35B4-1:1 
LNCipedia gene ID: lnc-SLC35B4-1
Ensembl Gene ID: ENSG00000229177
Ensembl Transcript ID: ENST00000453087
Location (hg38): chr7:134346071-134350791
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 327 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013264; ENST00000453087; ENST00000453087.1; AC008154.5-001; OTTHUMT00000340799.1; NONHSAT123461
Alternative gene names: XLOC_006611; linc-SLC35B4-1; ENSG00000229177; AC008154.5; ENSG00000229177.1; OTTHUMG00000155590.1; AC008154.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -234.586 non-coding 
CPAT coding probability 5.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC35B4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC35B4-1:1
3.1 lnc-SLC35B4-1:1
4.0 lnc-SLC35B4-1:1
4.1 lnc-SLC35B4-1:1
5.0 lnc-SLC35B4-1:1
5.1 lnc-C7orf49-16:1
5.2 lnc-SLC35B4-1:1