Transcript: lnc-SLC35B4-3:1

Basic information

LNCipedia transcript ID: lnc-SLC35B4-3:1 
LNCipedia gene ID: lnc-SLC35B4-3
RefSeq ID: NR_120513
Location (hg38): chr7:133800493-133824888
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1396 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000509019; NR_120513; NR_120513.1
Alternative gene names: ENSG00000250459; LOC101928861


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.5201 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC35B4-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC35B4-3:1
3.1 lnc-SLC35B4-3:1
4.0 lnc-SLC35B4-3:1
4.1 lnc-SLC35B4-3:1
5.0 lnc-SLC35B4-3:1
5.1 lnc-C7orf49-19:1
5.2 lnc-SLC35B4-3:1