Transcript: lnc-SLC35C1-3:1

Basic information

LNCipedia transcript ID: lnc-SLC35C1-3:1 
LNCipedia gene ID: lnc-SLC35C1-3
Location (hg38): chr11:45580585-45583474
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 671 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT019034; FPKM1_group_4599_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.8748 non-coding 
CPAT coding probability 6.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC35C1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2210P24.4.1-3:5
4.0 lnc-CTD-2210P24.4.1-3:5
4.1 lnc-CTD-2210P24.4.1-3:5
5.0 lnc-CTD-2210P24.4.1-3:5
5.1 lnc-OR5L2-86:1
5.2 lnc-SLC35C1-3:1