Transcript: lnc-SLC35C1-3:3

Basic information

LNCipedia transcript ID: lnc-SLC35C1-3:3 
LNCipedia gene ID: lnc-SLC35C1-3
Location (hg38): chr11:45582514-45583463
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 498 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019295; NONHSAT019036
Alternative gene names: XLOC_009122; linc-SLC35C1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.8748 non-coding 
CPAT coding probability 6.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC35C1-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTD-2210P24.4.1-2:2
3.1 lnc-CTD-2210P24.4.1-3:2
4.0 lnc-CTD-2210P24.4.1-3:2
4.1 lnc-CTD-2210P24.4.1-3:2
5.0 lnc-CTD-2210P24.4.1-3:2
5.1 lnc-OR5L2-86:3
5.2 lnc-SLC35C1-3:3