Transcript: lnc-SLC35C1-3:4

Basic information

LNCipedia transcript ID: lnc-SLC35C1-3:4 
LNCipedia gene ID: lnc-SLC35C1-3
Ensembl Gene ID: ENSG00000254514
Ensembl Transcript ID: ENST00000525926
Location (hg38): chr11:45582525-45583474
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 564 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000525926; ENST00000525926.1; RP11-958J22.3-001; OTTHUMT00000390126.1; NONHSAT019037
Alternative gene names: ENSG00000254514; RP11-958J22.3; ENSG00000254514.1; OTTHUMG00000166512.1; AC103855.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.8748 non-coding 
CPAT coding probability 6.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC35C1-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTD-2210P24.4.1-2:3
3.1 lnc-CTD-2210P24.4.1-3:3
4.0 lnc-CTD-2210P24.4.1-3:3
4.1 lnc-CTD-2210P24.4.1-3:3
5.0 lnc-CTD-2210P24.4.1-3:3
5.1 lnc-OR5L2-86:4
5.2 lnc-SLC35C1-3:4