Transcript: lnc-SLC35C1-83:11

Basic information

LNCipedia transcript ID: lnc-SLC35C1-83:11 
LNCipedia gene ID: lnc-SLC35C1-83
Ensembl Gene ID: ENSG00000254519
Ensembl Transcript ID: ENST00000529769
Location (hg38): chr11:45723309-45744250
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 878 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000529769; ENST00000529769.1; CTD-2210P24.1-003; OTTHUMT00000390133.1; NONHSAT021106
Alternative gene names: ENSG00000254519; CTD-2210P24.1; ENSG00000254519.1; OTTHUMG00000166515.1; ENSG00000254519.3; AC044839.1; AC044839.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.5635 non-coding 
CPAT coding probability 4.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC35C1-83:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTD-2210P24.4.1-1:4
3.1 lnc-CTD-2210P24.4.1-1:4
4.0 lnc-CTD-2210P24.4.1-1:4
4.1 lnc-CTD-2210P24.4.1-1:4
5.0 lnc-CTD-2210P24.4.1-1:4
5.1 lnc-OR5L2-83:11
5.2 lnc-SLC35C1-83:11