Transcript: lnc-SLC35C1-83:13

Basic information

LNCipedia transcript ID: lnc-SLC35C1-83:13 
LNCipedia gene ID: lnc-SLC35C1-83
Ensembl Gene ID: ENSG00000254519
Ensembl Transcript ID: ENST00000635284
Location (hg38): chr11:45739450-45744250
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 633 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000635284.1
Alternative gene names: ENSG00000254519.3; CTD-2210P24.1; AC044839.1; AC044839.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -183.7732 non-coding 
CPAT coding probability 7.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC35C1-83:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CTD-2210P24.4.1-1:15
4.1 lnc-CTD-2210P24.4.1-1:15
5.0 lnc-CTD-2210P24.4.1-1:15
5.1 lnc-OR5L2-83:13
5.2 lnc-SLC35C1-83:13