Transcript: lnc-SLC35D1-1:1

Basic information

LNCipedia transcript ID: lnc-SLC35D1-1:1 
LNCipedia gene ID: lnc-SLC35D1-1
Ensembl Gene ID: ENSG00000275678
Ensembl Transcript ID: ENST00000621423
Location (hg38): chr1:67121605-67123956
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2352 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621423.1
Alternative gene names: ENSG00000275678.1; RP4-547N15.3; AL133320.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.828 non-coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC35D1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SLC35D1-1:1
4.1 lnc-SLC35D1-1:1
5.0 lnc-SLC35D1-1:1
5.1 lnc-SLC35D1-1:1
5.2 lnc-SLC35D1-1:1