Transcript: lnc-SLC35F5-3:22

Basic information

LNCipedia transcript ID: lnc-SLC35F5-3:22 
LNCipedia gene ID: lnc-SLC35F5-3
Location (hg38): chr2:113819051-113820785
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 805 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004409; NONHSAT073839
Alternative gene names: XLOC_002283; linc-SLC35F5-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.6291 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC35F5-3:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC35F5-2:1
3.1 lnc-SLC35F5-2:1
4.0 lnc-SLC35F5-2:1
4.1 lnc-SLC35F5-3:22
5.0 lnc-SLC35F5-3:22
5.1 lnc-EN1-26:22
5.2 lnc-SLC35F5-3:22