Transcript: lnc-SLC35F5-3:4

Basic information

LNCipedia transcript ID: lnc-SLC35F5-3:4 
LNCipedia gene ID: lnc-SLC35F5-3
RefSeq ID: NR_110174
Location (hg38): chr2:113831183-113890992
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 590 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110174; NR_110174.1
Alternative gene names: LOC101060091


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.7319 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC35F5-3:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC35F5-3:4
4.0 lnc-SLC35F5-3:4
4.1 lnc-SLC35F5-3:4
5.0 lnc-SLC35F5-3:4
5.1 lnc-EN1-26:1
5.2 lnc-SLC35F5-3:4