Transcript: lnc-SLC35G3-1:3

Basic information

LNCipedia transcript ID: lnc-SLC35G3-1:3 
LNCipedia gene ID: lnc-SLC35G3-1
Location (hg38): chr17:35231450-35242327
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2022 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000499949; TCONS_00025221
Alternative gene names: ENSG00000247843; XLOC_012444; linc-AMAC1; AC022916.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.2729 non-coding 
CPAT coding probability 41.87% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC35G3-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC35G3-1:3
3.1 lnc-SLC35G3-1:3
4.0 lnc-SLC35G3-1:3
4.1 lnc-SLC35G3-1:3
5.0 lnc-SLC35G3-1:3
5.1 lnc-SRCIN1-101:11
5.2 lnc-SLC35G3-1:3