Transcript: lnc-SLC35G3-1:4

Basic information

LNCipedia transcript ID: lnc-SLC35G3-1:4 
LNCipedia gene ID: lnc-SLC35G3-1
Ensembl Gene ID: ENSG00000266947
Ensembl Transcript ID: ENST00000590478
Location (hg38): chr17:35231450-35242963
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2658 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT053069; ENST00000590478.1
Alternative gene names: ENSG00000266947.1; RP11-799D4.4; AC022916.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.2729 non-coding 
CPAT coding probability 68.28% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC35G3-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC35G3-1:4
4.0 lnc-SLC35G3-1:4
4.1 lnc-SLC35G3-1:4
5.0 lnc-SLC35G3-1:4
5.1 lnc-SRCIN1-101:1
5.2 lnc-SLC35G3-1:4