Transcript: lnc-SLC36A4-2:1

Basic information

LNCipedia transcript ID: lnc-SLC36A4-2:1 
LNCipedia gene ID: lnc-SLC36A4-2
Ensembl Gene ID: ENSG00000254705
Ensembl Transcript ID: ENST00000531176
Location (hg38): chr11:92400191-92408176
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 775 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531176.1; RP11-675M1.2-001; OTTHUMT00000394318.1; NONHSAT023621
Alternative gene names: ENSG00000254705.1; RP11-675M1.2; OTTHUMG00000167359.1; AP000722.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -305.5243 non-coding 
CPAT coding probability 2.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC36A4-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC36A4-2:1
4.0 lnc-SLC36A4-2:1
4.1 lnc-SLC36A4-2:1
5.0 lnc-SLC36A4-2:1
5.1 lnc-NOX4-28:1
5.2 lnc-SLC36A4-2:1