Transcript: lnc-SLC38A5-2:1

Basic information

LNCipedia transcript ID: lnc-SLC38A5-2:1 
LNCipedia gene ID: lnc-SLC38A5-2
Ensembl Gene ID: ENSG00000228343
Ensembl Transcript ID: ENST00000453810
Location (hg38): chrX:48579774-48581157
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 450 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453810.1; RP11-1148L6.5-001; OTTHUMT00000060763.1; NONHSAT136945
Alternative gene names: ENSG00000228343.1; RP11-1148L6.5; OTTHUMG00000024122.1; AC115618.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.1677 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC38A5-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC115618.1-1:1
4.0 lnc-AC115618.1-1:1
4.1 lnc-AC115618.1-1:1
5.0 lnc-AC115618.1-1:1
5.1 lnc-PCSK1N-7:1
5.2 lnc-SLC38A5-2:1