Transcript: lnc-SLC38A8-10:1

Basic information

LNCipedia transcript ID: lnc-SLC38A8-10:1 
LNCipedia gene ID: lnc-SLC38A8-10
Location (hg38): chr16:83864875-83869450
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1096 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: l_1372_chr16:83898479-83903055_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.2103 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC38A8-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC38A8-10:1
4.0 lnc-SLC38A8-10:1
4.1 lnc-SLC38A8-10:1
5.0 lnc-SLC38A8-10:1
5.1 lnc-MTHFSD-55:1
5.2 lnc-SLC38A8-10:1