Transcript: lnc-SLC38A8-2:4

Basic information

LNCipedia transcript ID: lnc-SLC38A8-2:4 
LNCipedia gene ID: lnc-SLC38A8-2
Ensembl Gene ID: ENSG00000260228
Ensembl Transcript ID: ENST00000565714
Location (hg38): chr16:83789967-83803528
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 332 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565714.1; RP11-483P21.2-004; OTTHUMT00000432944.1; NONHSAT144011; ENST00000565714.5
Alternative gene names: ENSG00000260228.1; RP11-483P21.2; OTTHUMG00000176643.1; ENSG00000260228.5; AC009119.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.0946 non-coding 
CPAT coding probability 5.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC38A8-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC38A8-2:4
4.0 lnc-SLC38A8-2:4
4.1 lnc-SLC38A8-2:4
5.0 lnc-SLC38A8-2:4
5.1 lnc-MTHFSD-56:12
5.2 lnc-SLC38A8-2:4