Transcript: lnc-SLC38A8-2:7

Basic information

LNCipedia transcript ID: lnc-SLC38A8-2:7 
LNCipedia gene ID: lnc-SLC38A8-2
Location (hg38): chr16:83789803-83803949
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 888 bp
Exons: 3
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA552:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -82.9441 non-coding 
CPAT coding probability 5.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC38A8-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SLC38A8-2:7
4.1 lnc-SLC38A8-2:7
5.0 lnc-SLC38A8-2:7
5.1 lnc-MTHFSD-56:11
5.2 lnc-SLC38A8-2:7