Transcript: lnc-SLC38A8-3:1

Basic information

LNCipedia transcript ID: lnc-SLC38A8-3:1 
LNCipedia gene ID: lnc-SLC38A8-3
Ensembl Gene ID: ENSG00000259914
Ensembl Transcript ID: ENST00000563342
Location (hg38): chr16:83725676-83726377
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 702 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563342.1; RP11-298D21.2-001; OTTHUMT00000432943.1; NONHSAT144007
Alternative gene names: ENSG00000259914.1; RP11-298D21.2; OTTHUMG00000176642.1; AC009063.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -184.6043 non-coding 
CPAT coding probability 1.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC38A8-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC38A8-3:1
4.0 lnc-SLC38A8-3:1
4.1 lnc-SLC38A8-3:1
5.0 lnc-SLC38A8-3:1
5.1 lnc-MTHFSD-57:1
5.2 lnc-SLC38A8-3:1