Transcript: lnc-SLC38A8-5:1

Basic information

LNCipedia transcript ID: lnc-SLC38A8-5:1 
LNCipedia gene ID: lnc-SLC38A8-5
Ensembl Gene ID: ENSG00000261103
Ensembl Transcript ID: ENST00000565904
Location (hg38): chr16:83710179-83717898
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 566 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565904.1; RP11-298D21.3-001; OTTHUMT00000432938.1; NONHSAT144004
Alternative gene names: ENSG00000261103.1; RP11-298D21.3; OTTHUMG00000176640.1; AC009063.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.8962 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC38A8-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC38A8-5:1
4.0 lnc-SLC38A8-5:1
4.1 lnc-SLC38A8-5:1
5.0 lnc-SLC38A8-5:1
5.1 lnc-MTHFSD-59:4
5.2 lnc-SLC38A8-5:1