Transcript: lnc-SLC38A8-5:3

Basic information

LNCipedia transcript ID: lnc-SLC38A8-5:3 
LNCipedia gene ID: lnc-SLC38A8-5
Location (hg38): chr16:83706502-83717899
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4138 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000261103.1|MICT00000137036.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -14.099 non-coding 
CPAT coding probability 2.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC38A8-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC38A8-5:3
5.0 lnc-SLC38A8-5:3
5.1 lnc-MTHFSD-59:2
5.2 lnc-SLC38A8-5:3