Transcript: lnc-SLC38A8-6:2

Basic information

LNCipedia transcript ID: lnc-SLC38A8-6:2 
LNCipedia gene ID: lnc-SLC38A8-6
Ensembl Gene ID: ENSG00000261410
Ensembl Transcript ID: ENST00000564635
Location (hg38): chr16:83383007-83397987
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 403 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564635.1; RP11-543N12.1-002; OTTHUMT00000432936.1; NONHSAT143998
Alternative gene names: ENSG00000261410.1; RP11-543N12.1; OTTHUMG00000176639.1; AC009142.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.5481 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC38A8-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC38A8-6:2
4.0 lnc-SLC38A8-6:2
4.1 lnc-SLC38A8-6:2
5.0 lnc-SLC38A8-6:2
5.1 lnc-MTHFSD-60:3
5.2 lnc-SLC38A8-6:2