Transcript: lnc-SLC39A10-2:1

Basic information

LNCipedia transcript ID: lnc-SLC39A10-2:1 
LNCipedia gene ID: lnc-SLC39A10-2
Ensembl Gene ID: ENSG00000224099
Ensembl Transcript ID: ENST00000413290
Location (hg38): chr2:195448532-195478925
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 989 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003072; ENST00000413290; ENST00000413290.1; AC064834.1-001; OTTHUMT00000334994.1; NONHSAT076172
Alternative gene names: XLOC_001796; linc-SLC39A10-2; ENSG00000224099; AC064834.1; ENSG00000224099.1; OTTHUMG00000154379.1; AC104823.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.28 non-coding 
CPAT coding probability 9.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A10-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC39A10-2:1
3.1 lnc-SLC39A10-2:1
4.0 lnc-SLC39A10-2:1
4.1 lnc-SLC39A10-2:1
5.0 lnc-SLC39A10-2:1
5.1 lnc-MAIP1-40:2
5.2 lnc-SLC39A10-2:1