Transcript: lnc-SLC39A10-6:1

Basic information

LNCipedia transcript ID: lnc-SLC39A10-6:1 
LNCipedia gene ID: lnc-SLC39A10-6
Ensembl Gene ID: ENSG00000260142
Ensembl Transcript ID: ENST00000569293
Location (hg38): chr2:193898367-193899394
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1028 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569293.1; RP11-764E7.1-001; OTTHUMT00000431712.1; NONHSAT076160
Alternative gene names: ENSG00000260142.1; RP11-764E7.1; OTTHUMG00000176276.1; AC068135.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -173.7224 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A10-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC39A10-6:1
4.0 lnc-SLC39A10-6:1
4.1 lnc-SLC39A10-6:1
5.0 lnc-SLC39A10-6:1
5.1 lnc-MAIP1-45:1
5.2 lnc-SLC39A10-6:1