Transcript: lnc-SLC39A11-1:1

Basic information

LNCipedia transcript ID: lnc-SLC39A11-1:1 ?
HGNC Gene Symbol: lnc-SLC39A11-1    ?
HGNC Full Gene Name: long intergenic non-protein coding RNA 511
Location (hg38): chr17:72598041-72640472
Strand: -
Class: intergenic
Transcript size: 2265 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000499674; ENST00000581549.1; LINC00511-018; OTTHUMT00000441438.1; NONHSAT055705; NR_033876; NR_033876.1
Alternative gene names: ENSG00000245411; AC080037.2; ENSG00000227036.2; LINC00511; OTTHUMG00000132227.4; ENSG00000227036.6


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -32.1568 non-coding ?
CPAT coding probability 8.72% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-1:1 yes no

Available literature

  1. Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell reports


Other resources

LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
4.1 lnc-SLC39A11-1:1
4.0 lnc-SLC39A11-1:1
1.3 lnc-SLC39A11-1:1
3.1 lnc-SLC39A11-1:1