Transcript: lnc-SLC39A11-1:12

Basic information

LNCipedia transcript ID: lnc-SLC39A11-1:12 ?
LNCipedia gene ID: lnc-SLC39A11-1
Location (hg19): chr17:70399463-70588479
Strand: -
Class: intergenic
Transcript size: 1696 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000457958.2; LINC00511-009; OTTHUMT00000441420.1; ENST00000457958.6
Alternative gene names: ENSG00000227036.2; LINC00511; OTTHUMG00000132227.4; ENSG00000227036.6

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score 13.2115 non-coding ?
CPAT coding probability 1.72% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-1:12 yes no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -570.07
Randfold P-value: 0.008

Targetting miRNAs

No microRNA targets found with MirTarget2

Available literature

  1. Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell reports

LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
3.1 lnc-SLC39A11-1:12
4.0 lnc-SLC39A11-1:12