Transcript: lnc-SLC39A11-1:14

Basic information

LNCipedia transcript ID: lnc-SLC39A11-1:14 ?
LNCipedia gene ID: lnc-SLC39A11-1
Location (hg19): chr17:70400663-70441259
Strand: -
Class: intergenic
Transcript size: 561 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000580500.1; LINC00511-005; OTTHUMT00000441422.1; NONHSAT055692; ENST00000580500.5
Alternative gene names: ENSG00000227036.2; LINC00511; OTTHUMG00000132227.4; ENSG00000227036.6


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -63.984 non-coding ?
CPAT coding probability 0.35% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-1:14 yes no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -197.82
Randfold P-value: 0.005

Targetting miRNAs

No microRNA targets found with MirTarget2

Available literature

  1. Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell reports


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
3.1 lnc-SLC39A11-1:14
4.0 lnc-SLC39A11-1:14