Transcript: lnc-SLC39A11-1:22

Basic information

LNCipedia transcript ID: lnc-SLC39A11-1:22 ?
LNCipedia gene ID: lnc-SLC39A11-1
Location (hg19): chr17:70400405-70416864
Strand: -
Class: intergenic
Transcript size: 577 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025758; NONHSAT055691
Alternative gene names: XLOC_012568; linc-ABCA5-3


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score 13.2115 non-coding ?
CPAT coding probability 0.35% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-1:22 yes no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -194.8
Randfold P-value: 0.009

Targetting miRNAs

No microRNA targets found with MirTarget2

Available literature

  1. Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell reports


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
3.1 lnc-SLC39A11-1:22
4.0 lnc-SLC39A11-1:22
1.3 lnc-SLC39A11-2:9