Transcript: lnc-SLC39A11-1:27

Basic information

LNCipedia transcript ID: lnc-SLC39A11-1:27 ?
LNCipedia gene ID: lnc-SLC39A11-1
Location (hg19): chr17:70319306-70335713
Strand: -
Class: intergenic
Transcript size: 227 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026152; NONHSAT055675
Alternative gene names: XLOC_012567; linc-ABCA5-5

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score non-coding ?
CPAT coding probability 14.79% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC39A11-1:27 yes no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -58.1
Randfold P-value: 0.63

Targetting miRNAs

No microRNA targets found with MirTarget2

Available literature

  1. Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell reports

LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-SLC39A11-3:5
4.0 lnc-SLC39A11-1:27
3.1 lnc-SLC39A11-1:27