Transcript: lnc-SLC39A11-1:3

Basic information

LNCipedia transcript ID: lnc-SLC39A11-1:3 ?
LNCipedia gene ID: lnc-SLC39A11-1
Location (hg38): chr17:72384302-72592804
Strand: -
Class: intergenic
Transcript size: 1747 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000453722; TCONS_00025252; NONHSAT055685
Alternative gene names: ENSG00000227036; XLOC_012568; linc-ABCA5-3; AC007639.1


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -30.3744 non-coding ?
CPAT coding probability 18.82% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-1:3 yes no

Available literature

  1. Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell reports


Other resources

LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-SLC39A11-2:1
4.1 lnc-SLC39A11-1:3
4.0 lnc-SLC39A11-1:3
3.1 lnc-SLC39A11-1:3