Transcript: lnc-SLC39A11-1:35

Basic information

LNCipedia transcript ID: lnc-SLC39A11-1:35 ?
LNCipedia gene ID: lnc-SLC39A11-1
Location (hg19): chr17:70549467-70550522
Strand: -
Class: intergenic
Transcript size: 624 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT055704
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score 7.2234 non-coding ?
CPAT coding probability 4.01% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-1:35 no no

Secondary structure information

RNAfold image: download
Randfold minimum free energy:
Randfold P-value:

Targetting miRNAs

No microRNA targets found with MirTarget2

Available literature

  1. Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell reports


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
4.0 lnc-SLC39A11-1:35
3.1 lnc-SLC39A11-1:35