Transcript: lnc-SLC39A11-1:39

Basic information

LNCipedia transcript ID: lnc-SLC39A11-1:39 ?
LNCipedia gene ID: lnc-SLC39A11-1
Location (hg19): chr17:70399470-70588939
Strand: -
Class: intergenic
Transcript size: 2511 bp
Exons: 5
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA622:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites non-coding ?
Highest peak:
PhyloCSF score non-coding ?
CPAT coding probability 18.19% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC39A11-1:39 yes no

Secondary structure information

RNAfold image: download
Randfold minimum free energy:
Randfold P-value:

Targetting miRNAs

No microRNA targets found with MirTarget2

Available literature

  1. Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell reports


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
4.0 lnc-SLC39A11-1:39