Transcript: lnc-SLC39A11-1:40

Basic information

LNCipedia transcript ID: lnc-SLC39A11-1:40 ?
LNCipedia gene ID: lnc-SLC39A11-1
Location (hg38): chr17:72403329-72592800
Strand: -
Class: intergenic
Transcript size: 2149 bp
Exons: 3
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA622:2
Alternative gene names:

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites non-coding ?
Highest peak:
PhyloCSF score 13.2115 non-coding ?
CPAT coding probability 18.49% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-1:40 yes no

Available literature

  1. Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell reports

Other resources

LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
4.1 lnc-SLC39A11-1:40
4.0 lnc-SLC39A11-1:40