Transcript: lnc-SLC39A11-1:5

Basic information

LNCipedia transcript ID: lnc-SLC39A11-1:5 ?
LNCipedia gene ID: lnc-SLC39A11-1
Location (hg19): chr17:70380462-70588943
Strand: -
Class: intergenic
Transcript size: 1697 bp
Exons: 5
Sources: Broad Institute
Alternative transcript names: TCONS_00025151
Alternative gene names: XLOC_012568; linc-ABCA5-3

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -28.763 non-coding ?
CPAT coding probability 18.86% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-1:5 yes no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -844.82
Randfold P-value: 0.001

Targetting miRNAs

No microRNA targets found with MirTarget2

Available literature

  1. Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell reports

LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-SLC39A11-2:2
3.1 lnc-SLC39A11-1:5
4.0 lnc-SLC39A11-1:5