Transcript: lnc-SLC39A11-1:6

Basic information

LNCipedia transcript ID: lnc-SLC39A11-1:6 ?
HGNC Gene Symbol: lnc-SLC39A11-1    ?
HGNC Full Gene Name: long intergenic non-protein coding RNA 673
Location (hg38): chr17:72403322-72592804
Strand: -
Class: intergenic
Transcript size: 2257 bp
Exons: 4
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00025114; NR_036488; NR_036488.1
Alternative gene names: XLOC_012568; linc-ABCA5-3; LINC00673


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score 13.2115 non-coding ?
CPAT coding probability 18.40% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-1:6 yes no

Available literature

  1. Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell reports


Other resources

LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
1.3 lnc-SLC39A11-2:3
4.0 lnc-SLC39A11-1:6
4.1 lnc-SLC39A11-1:6
3.1 lnc-SLC39A11-1:6