Transcript: lnc-SLC39A6-1:10

Basic information

LNCipedia transcript ID: lnc-SLC39A6-1:10 
LNCipedia gene ID: lnc-SLC39A6-1
Location (hg38): chr18:36185591-36186781
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1191 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260552.1|FTMT27000002474.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -39.8616 non-coding 
CPAT coding probability 39.87% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC39A6-1:10 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC39A6-1:10
5.0 lnc-SLC39A6-1:10
5.1 lnc-SMAD2-82:11
5.2 lnc-SLC39A6-1:10