Transcript: lnc-SLC44A3-1:16

Basic information

LNCipedia transcript ID: lnc-SLC44A3-1:16 
LNCipedia gene ID: lnc-SLC44A3-1
Location (hg38): chr1:94931878-94963227
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 571 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT004636
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.0838 non-coding 
CPAT coding probability 16.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC44A3-1:16 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC44A3-1:16
4.0 lnc-SLC44A3-1:16
4.1 lnc-SLC44A3-1:16
5.0 lnc-SLC44A3-1:16
5.1 lnc-BTBD8-39:24
5.2 lnc-SLC44A3-1:16