Transcript: lnc-SLC44A5-3:1

Basic information

LNCipedia transcript ID: lnc-SLC44A5-3:1 
LNCipedia gene ID: lnc-SLC44A5-3
Ensembl Gene ID: ENSG00000261213
Ensembl Transcript ID: ENST00000565735
Location (hg38): chr1:75122518-75123927
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1410 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565735.1; RP11-510C10.4-001; OTTHUMT00000431183.1; NONHSAT003977
Alternative gene names: ENSG00000261213.1; RP11-510C10.4; OTTHUMG00000175853.1; AC099786.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -260.0979 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC44A5-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC44A5-3:1
4.0 lnc-SLC44A5-3:1
4.1 lnc-SLC44A5-3:1
5.0 lnc-SLC44A5-3:1
5.1 lnc-FUBP1-37:1
5.2 lnc-SLC44A5-3:1