Transcript: lnc-SLC45A1-1:1

Basic information

LNCipedia transcript ID: lnc-SLC45A1-1:1 
LNCipedia gene ID: lnc-SLC45A1-1
Ensembl Gene ID: ENSG00000232912
Ensembl Transcript ID: ENST00000449895
Location (hg38): chr1:8424645-8434838
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 516 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000449895.1; RP5-1115A15.1-002; OTTHUMT00000004944.1; NONHSAT000751; ENST00000449895.5
Alternative gene names: ENSG00000232912.1; RP5-1115A15.1; OTTHUMG00000001772.1; ENSG00000232912.5; AL096855.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.6353 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC45A1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC45A1-1:1
4.0 lnc-SLC45A1-1:1
4.1 lnc-SLC45A1-1:1
5.0 lnc-SLC45A1-1:1
5.1 lnc-VAMP3-1:5
5.2 lnc-SLC45A1-1:1