Transcript: lnc-SLC47A1-1:3

Basic information

LNCipedia transcript ID: lnc-SLC47A1-1:3 
LNCipedia gene ID: lnc-SLC47A1-1
Location (hg38): chr17:19586624-19595929
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 598 bp
Exons: 7
Sources: NONCODE v4
Alternative transcript names: NONHSAT146503
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 658.3224 coding 
CPAT coding probability 5.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC47A1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC47A1-1:3
4.0 lnc-SLC47A1-1:3
4.1 lnc-SLC47A1-1:3
5.0 lnc-SLC47A1-1:3
5.1 lnc-PIPOX-134:3
5.2 lnc-SLC47A1-1:3