Transcript: lnc-SLC47A2-2:3

Basic information

LNCipedia transcript ID: lnc-SLC47A2-2:3 
LNCipedia gene ID: lnc-SLC47A2-2
Location (hg38): chr17:19646970-19648625
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1656 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000033186.1|HBMT00000622552.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 3.6184 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC47A2-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC47A2-2:3
5.0 lnc-SLC47A2-2:3
5.1 lnc-B9D1-14:2
5.2 lnc-SLC47A2-2:3