Transcript: lnc-SLC49A3-1:1

Basic information

LNCipedia transcript ID: lnc-SLC49A3-1:1 
LNCipedia gene ID: lnc-SLC49A3-1
Ensembl Gene ID: ENSG00000248416
Ensembl Transcript ID: ENST00000502923
Location (hg38): chr4:722275-724034
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 569 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000502923.1; RP11-1191J2.4-001; OTTHUMT00000358569.1
Alternative gene names: ENSG00000248416.1; RP11-1191J2.4; OTTHUMG00000159970.1; AC107464.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.9838 non-coding 
CPAT coding probability 3.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC49A3-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MFSD7-1:1
4.0 lnc-MFSD7-1:1
4.1 lnc-MFSD7-1:1
5.0 lnc-MFSD7-1:1
5.1 lnc-PSAPL1-110:1
5.2 lnc-SLC49A3-1:1