Transcript: lnc-SLC4A3-2:3

Basic information

LNCipedia transcript ID: lnc-SLC4A3-2:3 
LNCipedia gene ID: lnc-SLC4A3-2
Ensembl Gene ID: ENSG00000227308
Ensembl Transcript ID: ENST00000606673
Location (hg38): chr2:219685492-219737937
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 602 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606673.1
Alternative gene names: ENSG00000227308.2; AC009502.4; AC009502.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.9517 non-coding 
CPAT coding probability 2.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC4A3-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC4A3-2:3
4.0 lnc-SLC4A3-2:3
4.1 lnc-SLC4A3-2:3
5.0 lnc-SLC4A3-2:3
5.1 lnc-MOGAT1-46:8
5.2 lnc-SLC4A3-2:3