Transcript: lnc-SLC4A3-9:1

Basic information

LNCipedia transcript ID: lnc-SLC4A3-9:1 
LNCipedia gene ID: lnc-SLC4A3-9
Ensembl Gene ID: ENSG00000224819
Ensembl Transcript ID: ENST00000424395
Location (hg38): chr2:220791078-220797893
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 512 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003112; ENST00000424395; ENST00000424395.1; AC093843.1-001; OTTHUMT00000332709.1; NONHSAT077092
Alternative gene names: XLOC_001874; linc-CCDC140-5; ENSG00000224819; AC093843.1; ENSG00000224819.1; OTTHUMG00000153856.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.5711 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC4A3-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC4A3-8:1
3.1 lnc-SLC4A3-9:1
4.0 lnc-SLC4A3-9:1
4.1 lnc-SLC4A3-9:1
5.0 lnc-SLC4A3-9:1
5.1 lnc-MOGAT1-33:1
5.2 lnc-SLC4A3-9:1