Transcript: lnc-SLC52A1-2:2

Basic information

LNCipedia transcript ID: lnc-SLC52A1-2:2 
LNCipedia gene ID: lnc-SLC52A1-2
Location (hg38): chr17:5074994-5078372
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1433 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000262693.1|HBMT00000617103.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.6197 non-coding 
CPAT coding probability 36.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC52A1-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-GPR172B-2:3
5.0 lnc-GPR172B-2:3
5.1 lnc-PHF23-41:2
5.2 lnc-SLC52A1-2:2