Transcript: lnc-SLC5A9-1:1

Basic information

LNCipedia transcript ID: lnc-SLC5A9-1:1 
LNCipedia gene ID: lnc-SLC5A9-1
Location (hg38): chr1:48205965-48206843
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 270 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00000198; ENST00000431986; ENST00000431986.1; RP5-1024N4.2-001; OTTHUMT00000021839.1; NONHSAT003120
Alternative gene names: XLOC_000182; linc-SLC5A9-1; ENSG00000223720; RP5-1024N4.2; ENSG00000223720.1; OTTHUMG00000007957.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.7434 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC5A9-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC5A9-1:1
3.1 lnc-SLC5A9-1:1
4.0 lnc-SLC5A9-1:1
4.1 lnc-SLC5A9-1:1
5.0 lnc-SLC5A9-1:1
5.1 lnc-CMPK1-1:2
5.2 lnc-SLC5A9-1:1