Transcript: lnc-SLC5A9-2:2

Basic information

LNCipedia transcript ID: lnc-SLC5A9-2:2 
LNCipedia gene ID: lnc-SLC5A9-2
Ensembl Gene ID: ENSG00000226133
Ensembl Transcript ID: ENST00000439795
Location (hg38): chr1:48054209-48067201
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 789 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000197; ENST00000439795; ENST00000439795.1; RP4-683M8.2-002; OTTHUMT00000021834.1; NONHSAT003113
Alternative gene names: XLOC_000181; linc-SLC5A9-2; ENSG00000226133; RP4-683M8.2; ENSG00000226133.1; OTTHUMG00000007952.1; ENSG00000226133.6; AL356289.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.1538 non-coding 
CPAT coding probability 3.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC5A9-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC5A9-2:2
3.1 lnc-SLC5A9-2:2
4.0 lnc-SLC5A9-2:2
4.1 lnc-SLC5A9-2:2
5.0 lnc-SLC5A9-2:2
5.1 lnc-CMPK1-13:4
5.2 lnc-SLC5A9-2:2